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Between 19 and 25th June 2007, the Irish research vessel RV CELTIC EXPLORER will leave Galway on a short one week cruise to take a quick peak at the ocean depths 4800 meters beneath the ship's bow.
The cruise Chief Scientist, Richard Lampitt, invites you to follow what went on day by day on the cruise through the personal diaries, the audiocast from the ship, as well as videostreams on oceanography. |
24 June 2007 AudioCast with the Celtic Explorer summarising the mission !!! (9 min 30 sec)
19th June 2007
Full steam ahead – Leaving Galway
by Martin Agis
After loading the ship on Monday the 18th of June, we spent a day strapping up and fixing all loose equipment. This is an essential task if heavy equipment is to be prevented flying across the labs in rough seas! And there is good reason for it too, sailing the North Atlantic even in summer can be a bumpy ride .

Celtic Explorer. HSB Int. |
It is interesting to watch how everybody has his own way of securing their equipment depending on what is available and on their previous cruise experiences. It may sound difficult to believe, but at the moments like this, simple materials like rope, nails and scotch are worth their weight in gold. After all, the nearest hardware shop is not exactly around the corner.
Just before sailing, one last but equally important task is a quick trip to the local shop for vital provisions - sweets, newspapers, puzzles, etc. for the next few days out at sea.
Dinner gathers everyone together between 6-7pm, and offers a last chance to go through the checklist before the Celtic Explorer cuts the lines and sails out of Galway towards its destination: the Porcupine Abyssal Plain site, or otherwise known just as PAP. As the ships pulls away, most of us are on deck waving good bye to the lovely Irish town and to solid ground. We are all excited and happy to able to take part in this cruise, wishing for good weather so that we can complete our mission successfully.
What was on the menu today onboard the CELTIC EXPLORER?
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20th June 2007
A day of adaptation
Martin Agis 
The first day at sea starts with breakfast between 7.30 and 8.30am, but for some unlucky cruise members it begins with the reality at sea: seasickness!
The unlucky ones have our full sympathy as most of us already experienced being sea sick and therefore know how it feels. Fortunately, they will be up again in no time, as the body adapts in one or two days, normally.
The weather is rather good. Although it is cloudy we even have some sunshine now and then breaking through the cloud cover and the sea is relatively calm. So the program continues as planned: instruments are being assembled and the mooring is being prepared by the engineers to be ready when we arrive at the PAP site.
What was on the menu today onboard the CELTIC EXPLORER?
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21st June 2007, 19.00 GMT Latitude: 48°59.95' North Longitude: 16°30.12' West Weather: cloudy, sea is calmimg down
entry by Kate Larkin 
It is 48 hours since we set sail for the high seas and this morning we arrived at our destination – the Porcupine Abyssal Plain site. There is no signpost out here in the remote vastness of the North Atlantic, and no welcoming party – only the odd inquisitive seagull and the relentless waves. Beneath our feet, the ocean is deeper than the length of 80 Olympic swimming pools stacked vertically.Â

Waves through the port hole.
Martin Agis
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Around the Porcupine Abyssal Plain site, and in the North Atlantic, vast phytoplankton blooms occur in the spring and early summer in the surface waters which satellites can easily photograph from orbit. Satellite sensors are invaluable in reconstructing global maps of ocean productivity, but they have a limitation: they cannot penetrate deeper than the surface few meters.
Our mission is to monitor throughout the year, the changes in phytoplankton below the reach of satellite sensors using instruments attached to a seabed attached mooring. We have been doing this since 1989 at the Porcupine Abyssal Plain site and the data helps us determine the variability in seasonal as well long term changes in phytoplankton production and particle flux to the deep sea.
Tomorrow we will deploy a large mooring wire into the ocean with different sensors that measure properties of the seawater such as the temperature, nutrients and chlorophyll a concentration. My role on board is to help prepare these sensors for their full year at sea and in particular, to make sure the fluorometer sensor is set up and ready to survive in the North Atlantic for the next 12 months.
The fluorometer is a 0.5 m long piece of equipment that measures chlorophyll a (or the concentration of phytoplankton). It is a convenient and indirect way to obtain chlorophyll a profiles through the water, by shining a beam of light of known wavelength through a known volume of water and measuring the fluorescence of the algal cells produced by the excited choroplasts (for more on fluorometry).
Before we attach the fluorometer to the mooring line and deploy it for a full 12 months, however, we need to test it. For that the fluorometer is attached to the frame of the CTD (Conductivity Temperature Depth) Rosette – the workhorse of modern oceanography, and then plunged into the water down to a depth of 300m. This is a pressure tests as well as a check to see that the sensor logs data as it should.
In addition we also took water samples from the CTD Rosette bottles at various depths in order to calibrate the fluorometer sensor once back in the lab in Southampton. So, once the tests are successful, all that’s left to do is re-programme the fluorometer so that it measures the chlorophyll concentration every 2 hours for the next year and then we are all set!
What was on the menu today onboard the CELTIC EXPLORER?
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22nd June 2007, 0.15 GMT
Latitude 48° 59 North
Longitude 16° 22 West
On Site
entry by Mark Stinchcombe 
It’s been a busy day! A lot of activity all over the ship today. We arrived at the site this morning and begun the sequence of CTD dips in the water.
I am in charge of two sensors on this research cruise, one called the ISUS which measures the amount of nitrate in the water using a Ultra Violet lamp. Nitrate absorbs light at a certain wavelengths, so if we flash a beam of light at this particular wavelength through the water, we can measure how much of the light is absorbed and so how much nitrate is in the water.
The second sensor I am in charge of is called the NAS-3X. This is a different type of nitrate sensor which takes a sample of seawater and adds chemicals to it to start a reaction which ends up forming a coloured dye. The amount of dye produced is directly proportional to the amount of nitrate in the water. We are interested in the nitrate concentrations because nitrate is one of the nutrients that allows phytoplankton, the microscopic plants in the seawater, to grow and form large blooms .
One of the CTD Rosette deployments today had my sensors attached to it. This allows us to calibrate them, that is having a profile of the water with the sensors whilst being able to take water samples to check that the sensors are giving us the correct reading. That done, they are ready to be deployed for 12 months on the long term mooring. I have been changing the programming on the sensors today so they are now ready to be fitted to the frame and put overboard later on today to give us the nitrate concentrations at the PAP site every 2 hours for a whole year. This data, along with the data from the other instruments on the frame, will allow us to follow what is happening at this part of the North Atlantic at several depths and throughout the next year.
What was on the menu today onboard the CELTIC EXPLORER?
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22nd June 2007, 19.15 GMT
Latitude 48° 59 North
Longitude 16° 22 West
Mission Accomplished
entry by Martin Agis 

Last moments on deck for the PAP1 Ocean Observatory.
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It was a good day! And not just because of the weather, but because we fulfilled the major part of our mission and deployed the new observatory at the PAP site. While our cooks were preparing a delicious omelette for lunch, on deck the last preparations for the mooring were performed. After complementing the instrument frame with all the required instruments and all the last checks, we started with the deployment at 14.15 GMT. It was very exciting!
First, the big yellow buoy was heaved into the water and while we saw it floating away, several CTD (Conductivity, Temperature, Density) sensors were fixed to the mooring line one by one, at predetermined distances. We all watched with excitement as the new observatory went slowly into the water. The observatory is basically a long cable attached to the bottom at 4800 m depth, kept vertical by buoyancy spheres and a large yellow buoy, and onto which we can attach any sensor we need to. Amongst many others, one of the sensors connected to the observatory’s long cable was a CO2 sensor, which will be recording data throughout the next year, too.
It took a while to complete the deployment. The last to go was the anchor – a weight of 3 000 kg to keep the mooring from floating away with currents. Over 4 hours after we started, we watched the anchor slipping into the water and beginning of its way down to 4,800 meters at  49° 00 North and 16° 24 West. At 18.15 GMT, the brand new PAP1 ocean observatory was successfully deployed!
Thanks to all involved for completing the mission!
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23nd June 2007, 20.20 GMT
Latitude 49° 00 North
Longitude 16° 27 West
Tiny plankton in a BIG ocean
by Ludwig Jardillier, University of Warwick, England
For a lake ecologist used to working on small boats, coming to the open North Atlantic on the Celtic Explorer can be a big and difficult step! I quickly find out that I an susceptible to seasickness.
However, the pleasure of taking part in this marine cruise is enough to make me forget two days of seasickness. Discovering the life and research activity aboard the Irish ocean-going vessel, as well as the sea life in the open ocean, is a great experience. I’m already looking forward to the next cruise…
My responsibilities aboard centre around studying the flux of carbon and the main routes of carbon dioxide (CO2). Primary production (production of organic carbon compounds due to photosynthesis) is of course one of these main routes and the biggest part of primary production takes place in the oceans. If this work is purely fundamental, since the aim is to understand how the biosphere works, it is of course, even if indirectly, linked to the issue of global warming. Indeed, thanks to this small steps that help to understand a part of the functioning of the Earth, we will be able to better preserve it.
This is the second consecutive year that I come to the PAP site to study the smallest of phytoplankton, picophytoplankton, and how they might contribute to the primary production in our oceans. These microorganisms are unicellular (one cell is the whole organism), are smaller than 3 microns (20 can fit on a human hair!) and are photosynthetic. One of their members is the smallest known algae, which measures only about 0.8 microns. Their abundance is usually low, but thanks to their high uptake rates, they can take up more carbon than cells of similar size such as the photosynthetic bacteria (cyanobacteria). During the last decades, these organisms have been poorly studied because of their small size and the general absence of morphological characteristics that may help to distinguish them. The use of molecular techniques circumvents this problem and allowed to discover a great diversity among these tiny organisms. Almost every two years, a new group is discovered.
I collect samples at different depths using the CTD Rosette, to learn about their vertical distribution. In parallel, we measure different parameters, i.e. oxygen, temperature, salinity and nutrient concentrations. We do the same in other cruises to get an idea of the geographical distribution of this community of organisms. When we obtain a large enough data set, we will try to understand the relationships between the distribution of these organisms and the different environmental (physical and chemical) parameters.
For that, we concentrate the cells on filters. These will be used later on to analyse how many different species (diversity) there are and what is their evolutionary relationship based on their DNA. Additional samples are also collected to determine the abundance of these organisms by counting whole cells under a microscope. Because these cells cannot be affiliated to a group based on their morphology, we use molecular methods. Dye molecules (so called fluorescent probes) for example, that bind to species-specific molecules allow us therefore, to determine between different species.
However, studying the diversity of these microbes cannot be detached from the understanding of the functioning of this community. Therefore, I also perform experiments to measure its contribution to primary production.
Another way to understand the diversity, the physiology, the metabolism and the ecology of these organisms is to isolate new cells. Last year I isolated a new marine class of these organisms that have been observed in freshwater systems but never isolated in the marine environment. However, thanks to molecular methods based on the analysis of the DNA, we start to detect these freshwater organisms in many oceanic regions. The isolation and culture process requires a lot of luck and efforts back in the laboratory to succeed to obtain a monoculture before being able to do further work on these organisms. During the last year, I learned a lot on how to grow these new cells and will use these skills to try to isolate them again and hopefully discover other members of the same class.
The samples gathered the last few days will keep me busy for a while back in the lab. The expectation is exciting and motivating.
What was on the menu today onboard the CELTIC EXPLORER?
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23rd June 2007, 20.20 GMT
Latitude 49° 00 North
Longitude 16° 27 West
Last Day
by Martin Agis 
Today, saturday, was the last day of the cruise for taking samples and other activities like recovery of the PAP3 mooring, which has attached sediment traps. These sediment traps have been on the PAP site for the last 12 months, collecting at different depths the settling marine snow (the organic material of dead phytoplankton and zooplankton settling from the surface towards the seabed).Â

Marine Snow Collectors. The freshly collected sediment traps on deck of the Celtic Explorer, after being deployed for 12 months in the Atlantic.
Martin Agis
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The PAP3 mooring is attached to a heavy anchor on the seabed. To make it come to the surface, we use an acoustic signal. This signal activates an opening mechanism and releases the mooring from its anchor. Once free, the mooring is positively buoyant due to the dozens of air-filled glass spheres attached all along the mooring line (what does a mooring look like?),
and it floats up to the surface for us to collect.
The glass spheres also have another role – keep the mooring line, and all the instruments attached to it, vertical so that we can sample exactly the depth horizons that we are interested in.
As soon as the engineers sent the acoustic release signal, all hands on deck headed towards the bridge to look out for the mooring’s yellow buoyancy spheres. This is a nervous moment! Did the acoustic release work? Will the mooring come to the surface? Will we find it?
A lot of effort goes into deploying and collecting such deep sea observatories and the samples are very valuable. If they are not recovered, it can be a depressing moment for many people involved (read how the drifting fishing lines destroyed the observatory during the Discovery 2006 mission).

Nervous moments.
Martin Agis
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The minutes slowly went by, we were searching the surface with spyglasses hoping that we can recover the samples which have been collected. Suddenly somebody shouted ‘There!’, but after a closer look it turned out to be a different buoy dancing on the waves far away north of the ship. So the search continued. Finally, there it was: first one sphere appeared, then a chain of yellow spheres suddenly broke through the surface and gently moving up and down with the waves. The PAP3 was recovered!
After bringing the traps on board with their jars and their contents, new sediment traps were programmed and sent down again for another year of an automated collection of samples.
In addition to the recovery of the old and the deployment of the new PAP3 mooring, the CTD Rosette was used to gather profiles of the water column. Later on tonight there will be zooplankton net hauls from different depths just like the night before. This will keep us busy until we leave the PAP site close to midnight GMT when our heading will be Galway Port, from where we left 5 days ago.
What was on the menu today onboard the CELTIC EXPLORER?
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24th June 2007, 20.20 GMT
Latitude 50° 56 North
Longitude 13° 19 West
Until next time!
by Martin Agis
This is our last full day onboard the Celtic Explorer. Since about midnight GMT we are steaming at a speed of 11 knots north east towards Galway, which we will reach around noon on Monday the 25th June.
The mission has been very successful and we are content and happy that everything went so well. Sampling activities stopped of course, but now packing and cleaning takes over.

WATCH the video or
LISTEN to the podcast, both from the Celtic Explorer |
The scientists are working on archiving the data that has been collected, or packing the scientific material to have it ready for leaving the ship tomorrow. While we all consider our tasks more or less finished it is still ‘business as usual’ for our kitchen team James and Joseph who still have to feed 30 hungry people for another day and a half. In a good mood like always, James prepares our delicious meals even when the ship is swaying from underneath our feet. Tonight, for the last dinner onboard he will prepare steak for us!
The weather conditions are fine (the waves are not too big) and although this cruise has been very interesting and exciting we all are looking forward to setting foot on solid ground again.
Until next time!

Acknowledgements:
Many thanks to Kate Larkin (NOCS), Martin Agis (Oceanopolis), Mark Stichcombe (NOCS), Ludwig Jardillier (Univ. Warwick)
and
Richard Lampitt (Cruise Chief Scientist) aboard the Celtic Explorer
for contributing to this diary, as well as Osana Bonilla and Lise Cronne for
religiously translating
their entries into spanish and french, and Philippe Giendaj
for his IT expertise
.
Thanks are also due to all crew and scientific compliment
for making the cruise a successful one.
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